SNP Profiles of AMAZ 12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	AC	GT	CC	GG	AC	CG	GG	CC	GG	GG	AT	CC
1._RUQ_334b	_	_	AC	_	_	_	_	_	GG	_	GG	_	_	_
2._RUQ_334	_	_	AC	GT	CC	_	AC	CG	GG	CC	_	_	AT	_
3._AMAZ_12	_	_	AC	TT	CC	_	AC	CG	GG	CC	_	_	AT	_
4._RUQ_334	_	_	AC	_	_	_	_	_	GG	_	GG	_	_	_
5._GC-05-158-4-11	TT	CC	CC	GT	CT	GG	AA	CG	AA	CT	AG	GG	AT	GG
6._GC-05-158-4-11	TT	CC	_	GT	CT	GG	_	CG	AA	CT	AG	GG	AT	GG
7._GC-05-158-4-11	TT	CC	CC	GT	CT	GG	AA	CG	AA	CT	AG	GG	AT	GG
8._GC-05-158-4-11	TT	CC	CC	GT	_	GG	AA	CG	AA	CT	AG	GG	AT	GG
9._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	_	CG	AA	CT	AG	GG	AT	GG
10._GC-05-158-4-11	TT	CC	CC	GT	CT	GG	AA	CG	AA	CT	AG	GG	AT	GG
11._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	CT	AG	GG	AT	GG
12._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	CT	AG	GG	AT	GG
13._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	CT	AG	GG	AT	GG
14._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	CT	AG	GG	AT	GG
15._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	CT	_	_	AT	_
16._AMAZ_12	_	_	_	GT	CT	_	_	CG	AA	CT	_	_	AT	_
17._AMAZ_12	_	_	CC	GT	_	_	AA	CG	AA	CT	_	_	AT	_
18._AMAZ_12	_	_	CC	GT	CT	_	_	CG	AA	CT	_	_	AT	_
19._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	CT	_	_	AT	_
20._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	CT	_	_	AT	_
21._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	CT	_	_	AT	_
22._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	CT	_	_	AT	_
23._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	CT	_	_	AT	_
24._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	CT	_	_	AT	_
25._RUQ_334	AG	CC	AC	AC	GG	GG	AC	CG	GG	GG	GG	GG	AT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CC	GT	CG	AA	CT	CT	TT	GG	AG	TT	CC	CG
1._RUQ_334b	_	CC	_	_	GG	AA	CT	_	TT	GG	AG	_	CC	CG
2._RUQ_334	AA	CC	CC	GT	GG	AA	_	CT	_	GG	_	_	_	CG
3._AMAZ_12	AA	CC	CC	GT	GG	AA	_	CT	_	GG	_	_	_	CG
4._RUQ_334	_	AC	_	_	GG	AA	TT	_	CT	GG	AG	_	AC	GG
5._GC-05-158-4-11	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
6._GC-05-158-4-11	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
7._GC-05-158-4-11	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
8._GC-05-158-4-11	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
9._GC-05-010-1-10	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
10._GC-05-158-4-11	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
11._GC-05-010-1-10	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
12._GC-05-010-1-10	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
13._GC-05-010-1-10	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
14._GC-05-010-1-10	AG	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG
15._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
16._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
17._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
18._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
19._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
20._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
21._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
22._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
23._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
24._AMAZ_12	AG	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG
25._RUQ_334	_	CC	_	AC	CG	AA	AG	AG	_	CC	AG	AA	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	TT	AG	CC	CT	GG	AG	TT	TT	CT	CT	TT	GG	AA
1._RUQ_334b	_	_	AG	CC	_	_	_	_	TT	_	_	_	GG	_
2._RUQ_334	_	CT	AG	_	CT	_	_	_	TT	_	_	TT	GG	AG
3._AMAZ_12	_	CT	AG	_	CT	_	_	_	TT	_	_	TT	GG	AA
4._RUQ_334	_	_	AG	CT	_	_	_	_	TT	_	_	_	GG	_
5._GC-05-158-4-11	CC	CT	AG	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
6._GC-05-158-4-11	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
7._GC-05-158-4-11	_	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
8._GC-05-158-4-11	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
9._GC-05-010-1-10	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
10._GC-05-158-4-11	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
11._GC-05-010-1-10	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
12._GC-05-010-1-10	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
13._GC-05-010-1-10	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
14._GC-05-010-1-10	CC	CT	AA	CC	TT	GG	GG	TT	GT	TT	CT	CC	CG	AA
15._AMAZ_12	_	CT	AG	_	TT	_	_	_	GT	_	_	CC	CG	AA
16._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
17._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
18._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
19._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
20._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
21._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
22._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
23._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
24._AMAZ_12	_	CT	AA	_	TT	_	_	_	GT	_	_	CC	CG	AA
25._RUQ_334	_	AG	AG	_	AG	CC	AG	_	AA	AG	AG	AA	CC	AA

Input profile: AMAZ_12 RUQ_334

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._AMAZ_12 RUQ_334b

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._AMAZ_12 RUQ_334

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._AMAZ_12

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B94 T2

Dapeng Zhang, 2016

4._AMAZ_12 RUQ_334

78.1 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

5._AMAZ_12 GC-05-158-4-11

66.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._AMAZ_12 GC-05-158-4-11

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._AMAZ_12 GC-05-158-4-11

65.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._AMAZ_12 GC-05-158-4-11

65.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

9._AMAZ_12 GC-05-010-1-10

65.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._AMAZ_12 GC-05-158-4-11

65.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

11._AMAZ_12 GC-05-010-1-10

65.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._AMAZ_12 GC-05-010-1-10

65.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

13._AMAZ_12 GC-05-010-1-10

65.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._AMAZ_12 GC-05-010-1-10

65.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

15._AMAZ_12

60.4 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

16._AMAZ_12

59.1 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

17._AMAZ_12

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

18._AMAZ_12

58.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

19._AMAZ_12

58.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

20._AMAZ_12

58.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

21._AMAZ_12

58.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

22._AMAZ_12

58.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

23._AMAZ_12

58.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

24._AMAZ_12

58.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

25._AMAZ_12 RUQ_334

50 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484